Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-expression
Experiments
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[Homology]
Score
DvMF_0830PFAM: HI0933 family protein; FAD dependent oxidoreductase; KEGG: dde:Dde_1530 hypothetical protein. (419 aa)    
Predicted Functional Partners:
DvMF_0831
PFAM: CBS domain containing protein; protein of unknown function DUF21; transporter-associated region; KEGG: ana:alr5216 probable hemolysin.
       0.427
DvMF_2905
PFAM: surface antigen (D15); KEGG: lip:LI0688 outer membrane protein.
  
    0.403
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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