Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
DvMF_0856PFAM: VacJ family lipoprotein; KEGG: dde:Dde_2301 surface lipoprotein-like. (259 aa)    
Predicted Functional Partners:
DvMF_0855
PFAM: toluene tolerance family protein; KEGG: lip:LI0234 ABC-type transport system involved in resistance to organic solvents, auxiliary component.
 
 
 
 0.976
DvMF_0854
PFAM: Mammalian cell entry related domain protein; KEGG: dde:Dde_2299 putative ABC transport system substrate-binding protein.
 
   
 0.943
DvMF_0852
PFAM: protein of unknown function DUF140; KEGG: dde:Dde_2297 hypothetical protein.
 
   
 0.761
DvMF_0040
PFAM: Mammalian cell entry related domain protein; KEGG: dde:Dde_1983 hypothetical protein.
 
   
 0.586
DvMF_0853
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_2298 ATPase.
     
 0.545
DvMF_2802
PFAM: transport-associated; KEGG: dde:Dde_2000 transport-associated protein.
 
   
 0.448
DvMF_0038
PFAM: protein of unknown function DUF140; KEGG: sat:SYN_02070 ABC transporter permease protein.
 
   
 0.433
DvMF_2863
PFAM: AsmA family protein; KEGG: dde:Dde_1028 hypothetical protein.
  
   
 0.402
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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