STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0857PFAM: Cupin 2 conserved barrel domain protein; KEGG: dde:Dde_2303 hypothetical protein. (105 aa)    
Predicted Functional Partners:
DvMF_2667
KEGG: dde:Dde_2939 hypothetical protein.
  
     0.697
DvMF_0972
KEGG: dde:Dde_2610 hypothetical protein.
  
     0.676
DvMF_2642
KEGG: dde:Dde_3102 hypothetical protein.
  
     0.671
DvMF_0295
KEGG: dde:Dde_2026 hypothetical protein.
  
     0.666
DvMF_2186
PFAM: Dual specificity protein phosphatase; KEGG: dde:Dde_0605 protein tyrosine phosphatase / dual specificity protein phosphatase.
  
     0.625
DvMF_2275
SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_0365 metal dependent phosphohydrolase.
  
     0.608
DvMF_2777
KEGG: dde:Dde_2827 hypothetical protein.
  
     0.576
DvMF_0004
PFAM: TPR repeat-containing protein; protein of unknown function DUF181; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_2348 hypothetical protein.
  
     0.552
DvMF_1212
KEGG: dde:Dde_0319 hypothetical protein.
  
     0.527
DvMF_2636
KEGG: dde:Dde_3117 hypothetical protein.
  
     0.506
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.