Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0858KEGG: dde:Dde_2304 hypothetical protein. (119 aa)    
Predicted Functional Partners:
DvMF_0859
PFAM: protein of unknown function DUF340 membrane; KEGG: dde:Dde_2305 hypothetical protein.
 
    0.952
DvMF_0883
PFAM: 3'-5' exonuclease; KEGG: dde:Dde_2388 3'-5' exonuclease.
  
     0.598
DvMF_3033
KEGG: lip:LI0093 hypothetical protein.
  
     0.554
DvMF_0212
KEGG: dde:Dde_1682 hypothetical protein.
  
     0.548
DvMF_0405
KEGG: dde:Dde_2070 hypothetical protein.
  
     0.476
DvMF_0860
PFAM: extracellular solute-binding protein family 3; SMART: ionotropic glutamate receptor; KEGG: dde:Dde_2306 extracellular solute-binding protein.
       0.455
DvMF_0940
KEGG: dde:Dde_1057 histidinol-phosphate phosphatase; TIGRFAM: histidinol phosphate phosphatase HisJ family; PFAM: PHP domain protein; SMART: phosphoesterase PHP domain protein; Belongs to the PHP hydrolase family. HisK subfamily.
 
     0.443
DvMF_2267
PFAM: peptidase M15B and M15C DD-carboxypeptidase VanY/endolysin; KEGG: dde:Dde_0064 hypothetical protein.
  
     0.438
DvMF_1106
KEGG: dde:Dde_2556 phage uncharacterized protein-like.
  
     0.432
DvMF_2709
PFAM: nitroreductase; KEGG: gsu:GSU2426 hypothetical protein.
  
     0.417
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.