STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0892KEGG: dde:Dde_2398 hypothetical protein. (342 aa)    
Predicted Functional Partners:
DvMF_2861
PFAM: import inner membrane translocase subunit Tim44; KEGG: dde:Dde_0773 hypothetical protein.
  
     0.536
DvMF_2636
KEGG: dde:Dde_3117 hypothetical protein.
  
     0.521
DvMF_0893
KEGG: dde:Dde_2399 hypothetical protein.
       0.495
DvMF_0815
KEGG: dde:Dde_1543 hypothetical protein.
  
     0.426
DvMF_1494
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: dde:Dde_1415 type I secretion outer membrane protein, TolC.
  
     0.417
DvMF_0972
KEGG: dde:Dde_2610 hypothetical protein.
  
     0.402
DvMF_2851
Diguanylate cyclase and serine/threonine protein kinase with TPR repeats; KEGG: dde:Dde_0788 TPR repeat-containing protein; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; TPR repeat-containing protein; Tetratricopeptide TPR_4; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein.
 
   
 0.401
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.