STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0895KEGG: dde:Dde_1191 hypothetical protein. (289 aa)    
Predicted Functional Partners:
DvMF_2859
KEGG: dde:Dde_1189 hypothetical protein.
 
  
  0.979
DvMF_3139
PFAM: cobalamin (vitamin B12) biosynthesis CbiM protein; KEGG: dde:Dde_1190 cobalt transport protein CbiM.
 
    0.833
DvMF_3138
TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: dde:Dde_1192 cobalt ABC transporter, permease protein, putative.
 
     0.805
DvMF_3137
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dps:DP0756 ABC transporter, ATP-binding protein.
 
     0.801
DvMF_1694
KEGG: sfu:Sfum_0090 cytochrome c family protein.
  
 
 
 0.614
DvMF_1320
Putative transcriptional regulator, CopG family; Transcriptional regulator; Belongs to the transcriptional regulatory CopG/NikR family.
 
     0.504
DvMF_0894
PFAM: Hpt domain protein; KEGG: hha:Hhal_0647 multi-sensor hybrid histidine kinase.
       0.499
DvMF_1695
PFAM: cytochrome B561; KEGG: dol:Dole_3004 cytochrome b561.
  
     0.474
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.