Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_0898PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: dde:Dde_1463 mercuric reductase, putative. (508 aa)    
Predicted Functional Partners:
DvMF_0899
PFAM: SNARE associated Golgi protein; KEGG: dde:Dde_1462 hypothetical protein.
   
 0.994
sucD
succinyl-CoA synthetase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.
  
 0.978
DvMF_1788
PFAM: SNARE associated Golgi protein; KEGG: dde:Dde_1462 hypothetical protein.
   
 0.966
prs
Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
   
 0.886
DvMF_0341
TIGRFAM: glycine cleavage system T protein; PFAM: glycine cleavage T protein (aminomethyl transferase); Glycine cleavage T-protein barrel; KEGG: dde:Dde_1996 glycine cleavage system T protein.
 
 0.853
gcvH
Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
 
 0.848
DvMF_0223
Glycine dehydrogenase (decarboxylating); PFAM: glycine cleavage system P-protein; KEGG: dde:Dde_1691 glycine dehydrogenase subunit 2.
 
 0.843
DvMF_1710
PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein; KEGG: dau:Daud_0788 fumarate reductase/succinate dehydrogenase flavoprotein domain protein.
  
 0.780
DvMF_2459
KEGG: dde:Dde_1257 fumarate reductase flavoprotein subunit; TIGRFAM: succinate dehydrogenase or fumarate reductase, flavoprotein subunit; PFAM: fumarate reductase/succinate dehydrogenase flavoprotein domain protein.
  
 0.780
DvMF_2893
TIGRFAM: adenylylsulfate reductase, alpha subunit; KEGG: dde:Dde_1110 adenylylsulfate reductase.
  
 0.780
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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