Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DvMF_0915PFAM: SufBD protein; KEGG: dde:Dde_1444 hypothetical protein. (388 aa)    
Predicted Functional Partners:
DvMF_0914
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1445 ATPase.
 0.999
DvMF_2660
Fe-S cluster assembly protein NifU; May be involved in the formation or repair of [Fe-S] clusters present in iron-sulfur proteins.
  
 
 0.957
prfA
Peptide chain release factor 1; Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA.
     
 0.721
DvMF_2659
Cysteine desulfurase NifS; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
  
 
 0.654
coaE
Pseudouridine synthase, RluA family; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
     
 0.562
DvMF_0158
KEGG: dde:Dde_2018 HesB-like domain-containing protein; Contains selenocysteine; Belongs to the HesB/IscA family.
  
 0.561
DvMF_0159
KEGG: dde:Dde_2018 HesB-like domain-containing protein.
  
 0.561
DvMF_1886
PFAM: HesB/YadR/YfhF-family protein; KEGG: dde:Dde_2018 HesB-like domain-containing protein.
  
 0.561
DvMF_0916
PFAM: YCII-related; KEGG: cvi:CV_4150 hypothetical protein.
       0.539
DvMF_0913
PFAM: Rhomboid family protein; KEGG: dde:Dde_1446 rhomboid family protein.
       0.521
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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