Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_0932PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: stm:STM0612 putative hydrogenase protein. (195 aa)    
Predicted Functional Partners:
DvMF_0931
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sea:SeAg_B0650 molybdopterin-containing oxidoreductase catalytic subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.963
DvMF_0933
KEGG: sea:SeAg_B0652 molybdopterin-containing oxidoreductase membrane anchor subunit.
 
 
 0.910
DvMF_1612
TIGRFAM: anaerobic dimethyl sulfoxide reductase, A subunit, DmsA/YnfE family; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: apl:APL_1674 anaerobic dimethyl sulfoxide reductase chain A precursor; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.853
DvMF_2470
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sea:SeAg_B0650 molybdopterin-containing oxidoreductase catalytic subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.851
DvMF_0643
Contains selenocysteine; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: sfu:Sfum_3510 formate dehydrogenase, alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 0.820
DvMF_0646
KEGG: dde:Dde_3513 formate dehydrogenase alpha subunit; TIGRFAM: formate dehydrogenase, alpha subunit; Contains selenocysteine; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region.
  
 0.820
DvMF_1217
KEGG: dde:Dde_0813 formate dehydrogenase alpha subunit; TIGRFAM: formate dehydrogenase, alpha subunit; Contains selenocysteine; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 0.820
DvMF_2533
Contains selenocysteine; TIGRFAM: formate dehydrogenase, alpha subunit; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: dde:Dde_0813 formate dehydrogenase alpha subunit; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
  
 0.820
DvMF_0166
Formate dehydrogenase; PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: mta:Moth_0450 formate dehydrogenase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 
 0.815
DvMF_1484
PFAM: molybdopterin oxidoreductase; molydopterin dinucleotide-binding region; molybdopterin oxidoreductase Fe4S4 region; KEGG: pth:PTH_2707 anaerobic dehydrogenases; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family.
 0.801
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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