Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_0966PFAM: metal-dependent phosphohydrolase HD sub domain; SMART: metal-dependent phosphohydrolase HD region; KEGG: dde:Dde_1031 metal dependent phosphohydrolase. (343 aa)    
Predicted Functional Partners:
DvMF_0965
KEGG: dde:Dde_1032 pyruvate kinase; TIGRFAM: pyruvate kinase; PFAM: HpcH/HpaI aldolase; Pyruvate kinase barrel; Pyruvate kinase alpha/beta; Belongs to the pyruvate kinase family.
 
     0.597
DvMF_0509
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_1834 diguanylate cyclase.
 
 
 0.535
DvMF_2762
TIGRFAM: diguanylate cyclase; hemerythrin-like metal-binding protein; PFAM: GGDEF domain containing protein; MASE1 domain protein; Hemerythrin HHE cation binding domain protein; KEGG: rfr:Rfer_4030 diguanylate cyclase.
 
 
 0.477
DvMF_2637
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; extracellular solute-binding protein family 3; KEGG: mag:amb3301 response regulator.
 
 
 0.466
DvMF_1014
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; histidine kinase HAMP region domain protein; KEGG: dde:Dde_0886 diguanylate cyclase.
 
 
 0.464
DvMF_0556
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_1801 diguanylate cyclase.
  
 
 0.462
DvMF_1366
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_2680 diguanylate cyclase.
 
 
 0.459
DvMF_3203
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mag:amb3563 C4-dicarboxylate transport sensor protein DctB.
 
 
 0.458
DvMF_1537
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: dde:Dde_0569 diguanylate cyclase.
  
 
 0.457
DvMF_0042
TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; KEGG: mca:MCA0504 GGDEF domain-containing protein.
 
 
 0.441
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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