STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_0972KEGG: dde:Dde_2610 hypothetical protein. (245 aa)    
Predicted Functional Partners:
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
       0.803
DvMF_2896
KEGG: dde:Dde_1113 heterodisulfide reductase, transmembrane subunit, putative.
  
   
 0.751
DvMF_2642
KEGG: dde:Dde_3102 hypothetical protein.
  
    0.729
DvMF_0436
KEGG: dde:Dde_1759 hypothetical protein.
  
     0.713
DvMF_1551
KEGG: dde:Dde_0523 hypothetical protein.
 
     0.697
DvMF_2667
KEGG: dde:Dde_2939 hypothetical protein.
  
    0.684
DvMF_0857
PFAM: Cupin 2 conserved barrel domain protein; KEGG: dde:Dde_2303 hypothetical protein.
  
     0.676
DvMF_0295
KEGG: dde:Dde_2026 hypothetical protein.
  
     0.656
DvMF_3045
KEGG: dde:Dde_1443 hypothetical protein.
  
     0.612
DvMF_0973
KEGG: dde:Dde_2611 putative lipoprotein.
       0.573
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.