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rplT protein (Desulfovibrio vulgaris Miyazaki) - STRING interaction network
"rplT" - 50S ribosomal protein L20 in Desulfovibrio vulgaris Miyazaki
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
rplT50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit (117 aa)    
Predicted Functional Partners:
rpmI
PFAM- ribosomal protein L35; KEGG- dde-Dde_2637 50S ribosomal protein L35; Belongs to the bacterial ribosomal protein bL35 family (65 aa)
   
 
  0.998
rplS
50S ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site (115 aa)
 
 
  0.996
rplU
50S ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20 (102 aa)
   
 
  0.996
rpmA
PFAM- ribosomal protein L27; KEGG- dde-Dde_2691 50S ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family (89 aa)
   
 
  0.996
rplM
50S ribosomal protein L13; This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly (144 aa)
 
 
  0.993
rpsP
PFAM- ribosomal protein S16; KEGG- dde-Dde_1099 30S ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family (79 aa)
   
 
  0.993
rplD
50S ribosomal protein L4; One of the primary rRNA binding proteins, this protein initially binds near the 5’-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome (206 aa)
 
 
  0.993
rplA
50S ribosomal protein L1; Binds directly to 23S rRNA. The L1 stalk is quite mobile in the ribosome, and is involved in E site tRNA release (235 aa)
   
 
  0.992
rpsI
PFAM- ribosomal protein S9; KEGG- dde-Dde_2608 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family (130 aa)
 
 
  0.992
rplQ
PFAM- ribosomal protein L17; KEGG- dde-Dde_2230 50S ribosomal protein L17 (133 aa)
 
 
  0.992
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris Miyazaki, Desulfovibrio vulgaris str. 'Miyazaki F'
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