STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1023Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; KEGG: dtni:19367. (684 aa)    
Predicted Functional Partners:
DvMF_2600
PFAM: beta-lactamase domain protein; KEGG: bpt:Bpet0311 metallo-beta-lactamase superfamily protein.
    
 
 0.518
DvMF_2853
PFAM: beta-lactamase domain protein; KEGG: dde:Dde_0786 metallo-beta-lactamase family protein.
    
 
 0.518
DvMF_3180
PFAM: beta-lactamase domain protein; KEGG: dde:Dde_1331 metallo-beta-lactamase family protein.
    
 
 0.518
DvMF_0929
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; KEGG: pca:Pcar_0664 putative response regulator protein.
  
 
 0.422
DvMF_1374
Putative PAS/PAC sensor protein; KEGG: rxy:Rxyl_0093 multi-sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: response regulator receiver; PAS fold-3 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
  
 
 0.409
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.