STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1024KEGG: dol:Dole_1403 hypothetical protein. (654 aa)    
Predicted Functional Partners:
DvMF_1027
PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: dol:Dole_1406 type II and III secretion system protein.
 
 
 0.973
DvMF_1028
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: dol:Dole_1408 type II secretion system protein E.
 
 
 0.914
DvMF_1029
PFAM: type II secretion system protein; KEGG: dol:Dole_1409 type II secretion system protein.
 
 
 
 0.902
DvMF_1034
KEGG: dol:Dole_1414 hypothetical protein.
 
  
 0.831
DvMF_1026
KEGG: dol:Dole_1405 hypothetical protein.
       0.786
DvMF_1025
Hypothetical protein.
       0.782
DvMF_1683
PFAM: protein of unknown function DUF1351; KEGG: cpy:Cphy_2989 hypothetical protein.
  
     0.757
DvMF_0846
KEGG: dde:Dde_3699 hypothetical protein.
  
     0.753
DvMF_1161
PFAM: Hemolysin-type calcium-binding region; KEGG: rso:RS05070 putative hemagglutinin/hemolysin-related protein.
 
     0.748
DvMF_3168
KEGG: dde:Dde_1310 hypothetical protein.
  
 
 0.747
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.