STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1027PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: dol:Dole_1406 type II and III secretion system protein. (552 aa)    
Predicted Functional Partners:
DvMF_1024
KEGG: dol:Dole_1403 hypothetical protein.
 
 
 0.973
DvMF_1028
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: dol:Dole_1408 type II secretion system protein E.
 
 
 
 0.970
DvMF_1029
PFAM: type II secretion system protein; KEGG: dol:Dole_1409 type II secretion system protein.
 
 
 
 0.963
DvMF_1031
KEGG: csc:Csac_1061 twitching motility protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase.
 
   
 0.780
DvMF_1037
Peptidase A24A domain protein; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.757
DvMF_1026
KEGG: dol:Dole_1405 hypothetical protein.
       0.729
DvMF_1038
Twitching motility protein; KEGG: sat:SYN_00125 pili retraction protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase.
 
   
 0.717
DvMF_1025
Hypothetical protein.
       0.710
DvMF_1030
KEGG: sde:Sde_1141 MSHA pilin protein MshB.
 
   
 0.648
DvMF_1039
KEGG: dol:Dole_1407 type II secretory pathway ATPase ExeA.
 
   
 0.582
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.