Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_1028PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: dol:Dole_1408 type II secretion system protein E. (568 aa)    
Predicted Functional Partners:
DvMF_1029
PFAM: type II secretion system protein; KEGG: dol:Dole_1409 type II secretion system protein.
 
 
 0.998
DvMF_1027
PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: dol:Dole_1406 type II and III secretion system protein.
 
 
 
 0.980
DvMF_1037
Peptidase A24A domain protein; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
 
 0.922
DvMF_1024
KEGG: dol:Dole_1403 hypothetical protein.
 
 
 0.901
DvMF_1030
KEGG: sde:Sde_1141 MSHA pilin protein MshB.
 
 
 0.892
DvMF_2450
PFAM: ComEC/Rec2-related protein; KEGG: dde:Dde_0547 ComEC/Rec2-related protein.
  
  
 0.815
DvMF_1032
KEGG: dol:Dole_1416 hypothetical protein.
  
 
 0.795
DvMF_1033
Hypothetical protein; KEGG: pap:PSPA7_5191 type IV pilus modification protein PilV.
  
 
 0.795
DvMF_1034
KEGG: dol:Dole_1414 hypothetical protein.
  
 
 0.794
DvMF_1980
KEGG: sus:Acid_6343 hypothetical protein.
  
  
 0.756
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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