Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DvMF_1034KEGG: dol:Dole_1414 hypothetical protein. (1104 aa)    
Predicted Functional Partners:
DvMF_1024
KEGG: dol:Dole_1403 hypothetical protein.
 
  
 0.830
DvMF_1028
PFAM: type II secretion system protein E; General secretory system II protein E domain protein; KEGG: dol:Dole_1408 type II secretion system protein E.
  
 
 0.794
DvMF_1029
PFAM: type II secretion system protein; KEGG: dol:Dole_1409 type II secretion system protein.
  
  
 0.791
DvMF_1161
PFAM: Hemolysin-type calcium-binding region; KEGG: rso:RS05070 putative hemagglutinin/hemolysin-related protein.
 
   
 0.785
DvMF_1033
Hypothetical protein; KEGG: pap:PSPA7_5191 type IV pilus modification protein PilV.
       0.775
DvMF_1327
KEGG: mma:MM_1125 hypothetical protein.
  
     0.774
DvMF_1639
Phage-related protein tail component-like protein; KEGG: mag:amb0395 hypothetical protein.
  
     0.774
DvMF_1682
KEGG: gsu:GSU2152 hypothetical protein.
  
     0.774
DvMF_1781
PFAM: glycosyl transferase family 8; KEGG: cre:CHLREDRAFT_186791 hypothetical protein Pfam: Cu-oxidase_3 DUF246 Glyco_transf_8.
  
     0.774
DvMF_1643
TIGRFAM: phage tape measure protein; KEGG: mfa:Mfla_2689 hypothetical protein.
  
     0.773
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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