STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1039KEGG: dol:Dole_1407 type II secretory pathway ATPase ExeA. (680 aa)    
Predicted Functional Partners:
DvMF_1643
TIGRFAM: phage tape measure protein; KEGG: mfa:Mfla_2689 hypothetical protein.
 
  
 0.885
DvMF_1038
Twitching motility protein; KEGG: sat:SYN_00125 pili retraction protein; TIGRFAM: twitching motility protein; PFAM: type II secretion system protein E; SMART: AAA ATPase.
 
     0.757
DvMF_0751
KEGG: lip:LIC026 hypothetical protein.
 
    0.713
DvMF_1306
KEGG: dde:Dde_3394 hypothetical protein.
  
    0.711
DvMF_1024
KEGG: dol:Dole_1403 hypothetical protein.
 
    0.682
DvMF_1305
KEGG: dde:Dde_3393 tail fiber protein, putative.
  
    0.672
DvMF_1636
KEGG: nmu:Nmul_A1447 hypothetical protein.
  
    0.672
DvMF_1027
PFAM: type II and III secretion system protein; NolW domain protein; Secretin/TonB short domain; KEGG: dol:Dole_1406 type II and III secretion system protein.
 
   
 0.582
DvMF_0731
TIGRFAM: phage virion morphogenesis protein; PFAM: virion morphogenesis (putative tail completion) protein; KEGG: rsq:Rsph17025_2099 phage virion morphogenesis protein.
 
    0.581
DvMF_1037
Peptidase A24A domain protein; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue.
 
  
 0.543
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.