Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DvMF_1042KEGG: trq:TRQ2_0171 hypothetical protein. (239 aa)    
Predicted Functional Partners:
DvMF_1005
KEGG: dde:Dde_2659 acyl carrier protein, putative.
  
 
 0.711
acpP
Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis; Belongs to the acyl carrier protein (ACP) family.
  
 
 0.711
DvMF_0125
PFAM: Polyprenyl synthetase; KEGG: dde:Dde_2201 farnesyl-diphosphate synthase; Belongs to the FPP/GGPP synthase family.
  
 0.701
DvMF_2490
PFAM: Polyprenyl synthetase; KEGG: dde:Dde_3189 trans-hexaprenyltranstransferase; Belongs to the FPP/GGPP synthase family.
  
 0.686
DvMF_0256
PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_1725 long-chain-fatty-acid--CoA ligase.
    
 0.673
DvMF_2357
PFAM: AMP-dependent synthetase and ligase; KEGG: dde:Dde_0557 acyl-CoA synthetase.
    
 0.673
DvMF_2579
Transcriptional regulator, ArsR family; PFAM: regulatory protein ArsR; UbiE/COQ5 methyltransferase; Methyltransferase type 11; Methyltransferase type 12; KEGG: dde:Dde_3135 ArsR family transcriptional regulator.
   
 0.658
DvMF_1838
PFAM: Radical SAM domain protein; KEGG: sfu:Sfum_0802 radical SAM domain protein.
  
 0.645
DvMF_0017
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: wsu:WS2181 hypothetical protein.
  
 0.631
DvMF_0133
PFAM: Methyltransferase type 11; KEGG: dde:Dde_2191 hypothetical protein.
  
 0.631
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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