Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DvMF_1054PFAM: protein of unknown function DUF1499; KEGG: syn:sll1620 hypothetical protein. (175 aa)    
Predicted Functional Partners:
DvMF_0899
PFAM: SNARE associated Golgi protein; KEGG: dde:Dde_1462 hypothetical protein.
 
     0.734
DvMF_1788
PFAM: SNARE associated Golgi protein; KEGG: dde:Dde_1462 hypothetical protein.
 
     0.715
DvMF_2327
TIGRFAM: pyridine nucleotide-disulfide oxidoreductase family protein; PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_2562 pyridine nucleotide-disulfide oxidoreductase.
  
     0.551
DvMF_0589
KEGG: dde:Dde_2625 glycosyl transferase, group 2 family protein.
  
     0.527
DvMF_0588
KEGG: dde:Dde_2624 hypothetical protein.
 
     0.475
DvMF_1053
PFAM: regulatory protein TetR; KEGG: dde:Dde_1283 TetR family transcriptional regulator.
       0.463
DvMF_0898
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; HI0933 family protein; KEGG: dde:Dde_1463 mercuric reductase, putative.
 
     0.457
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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