Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DvMF_1062PFAM: Tail Collar domain protein; KEGG: dde:Dde_1065 hypothetical protein. (530 aa)    
Predicted Functional Partners:
DvMF_1065
KEGG: dde:Dde_2545 hypothetical protein.
 
    0.813
DvMF_1066
KEGG: dde:Dde_2546 hypothetical protein.
 
    0.790
DvMF_1061
Hypothetical protein.
       0.773
DvMF_1643
TIGRFAM: phage tape measure protein; KEGG: mfa:Mfla_2689 hypothetical protein.
  
  
 0.735
DvMF_1072
KEGG: dde:Dde_2550 hypothetical protein.
 
    0.711
DvMF_1305
KEGG: dde:Dde_3393 tail fiber protein, putative.
 
  
 0.649
DvMF_0750
KEGG: lip:LIC089 hypothetical protein.
 
  
 0.619
DvMF_1652
TIGRFAM: phage head-tail adaptor; PFAM: putative head-tail adaptor protein; KEGG: asu:Asuc_1242 phage head-tail adaptor, putative.
  
   0.550
DvMF_1657
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: smd:Smed_1336 phage portal protein, HK97 family.
  
 
 0.548
DvMF_1355
Hypothetical protein; KEGG: ter:Tery_2034 RTX toxins and related Ca2+-binding protein.
   
   0.542
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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