Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1065KEGG: dde:Dde_2545 hypothetical protein. (692 aa)    
Predicted Functional Partners:
DvMF_1066
KEGG: dde:Dde_2546 hypothetical protein.
 
    0.957
DvMF_1072
KEGG: dde:Dde_2550 hypothetical protein.
 
    0.869
DvMF_1062
PFAM: Tail Collar domain protein; KEGG: dde:Dde_1065 hypothetical protein.
 
    0.813
DvMF_1067
Hypothetical protein; KEGG: fre:Franean1_1779 2-oxoglutarate dehydrogenase E2 component.
       0.773
DvMF_2347
KEGG: dde:Dde_0307 hypothetical protein.
  
     0.664
DvMF_0261
KEGG: dde:Dde_2148 chemotaxis protein CheZ, putative.
  
     0.633
DvMF_1664
KEGG: mag:amb1193 hypothetical protein.
 
     0.605
DvMF_1068
Hypothetical protein.
  
    0.598
DvMF_0758
PFAM: SNARE associated Golgi protein; KEGG: dde:Dde_1595 hypothetical protein.
  
     0.581
DvMF_1063
Hypothetical protein; KEGG: mrd:Mrad2831_3442 secretion protein HlyD family protein.
       0.466
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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