Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1070KEGG: dde:Dde_2548 hypothetical protein. (221 aa)    
Predicted Functional Partners:
DvMF_1069
KEGG: dde:Dde_2547 hypothetical protein.
  
    0.743
DvMF_1107
KEGG: dde:Dde_2557 hypothetical protein.
   
    0.623
DvMF_0739
KEGG: hsm:HSM_0675 hypothetical protein.
   
    0.621
DvMF_1072
KEGG: dde:Dde_2550 hypothetical protein.
  
    0.589
DvMF_0624
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; KEGG: dde:Dde_0223 oxidoreductase, putative.
   
    0.588
DvMF_1279
KEGG: sfu:Sfum_1873 hypothetical protein.
   
    0.588
DvMF_1071
KEGG: dde:Dde_2549 hypothetical protein.
       0.563
DvMF_1068
Hypothetical protein.
  
    0.551
DvMF_1073
KEGG: dde:Dde_2551 hypothetical protein.
       0.546
DvMF_0727
PFAM: Protein of unknown function DUF1804; KEGG: ypy:YPK_0194 protein of unknown function DUF1804.
   
    0.501
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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