Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1072KEGG: dde:Dde_2550 hypothetical protein. (595 aa)    
Predicted Functional Partners:
DvMF_1066
KEGG: dde:Dde_2546 hypothetical protein.
 
    0.945
DvMF_1065
KEGG: dde:Dde_2545 hypothetical protein.
 
    0.869
DvMF_1071
KEGG: dde:Dde_2549 hypothetical protein.
  
    0.789
DvMF_1073
KEGG: dde:Dde_2551 hypothetical protein.
       0.768
DvMF_1300
KEGG: dde:Dde_3388 hypothetical protein.
   
    0.743
DvMF_1106
KEGG: dde:Dde_2556 phage uncharacterized protein-like.
  
    0.714
DvMF_1062
PFAM: Tail Collar domain protein; KEGG: dde:Dde_1065 hypothetical protein.
 
    0.711
DvMF_1664
KEGG: mag:amb1193 hypothetical protein.
  
     0.649
DvMF_1301
KEGG: dde:Dde_3389 baseplate assembly protein, putative.
   
    0.626
DvMF_3051
PFAM: protein of unknown function DUF88; KEGG: dde:Dde_2484 hypothetical protein.
  
     0.615
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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