STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1080Hypothetical protein; KEGG: sit:TM1040_0800 terminase small subunit. (256 aa)    
Predicted Functional Partners:
DvMF_1106
KEGG: dde:Dde_2556 phage uncharacterized protein-like.
 
     0.703
DvMF_0745
KEGG: bbr:BB3615 putative phage tail protein.
  
    0.601
DvMF_1643
TIGRFAM: phage tape measure protein; KEGG: mfa:Mfla_2689 hypothetical protein.
 
    0.552
DvMF_1078
KEGG: dde:Dde_2569 hypothetical protein.
       0.533
DvMF_0651
KEGG: dde:Dde_2862 hypothetical protein.
  
     0.519
DvMF_1072
KEGG: dde:Dde_2550 hypothetical protein.
 
    0.511
DvMF_1303
KEGG: dde:Dde_3391 baseplate assembly protein, putative.
 
    0.507
DvMF_1079
KEGG: pla:Plav_0904 hypothetical protein.
       0.496
DvMF_3051
PFAM: protein of unknown function DUF88; KEGG: dde:Dde_2484 hypothetical protein.
  
     0.496
DvMF_0749
PFAM: Baseplate J family protein; KEGG: bbr:BB3612 putative phage tail protein.
  
    0.441
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.