Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
DvMF_1083PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_1168 TPR repeat-containing protein. (218 aa)    
Predicted Functional Partners:
DvMF_0478
PFAM: TPR repeat-containing protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_2117 TPR repeat-containing protein.
 
 0.839
DvMF_0405
KEGG: dde:Dde_2070 hypothetical protein.
  
 0.795
htpG
Heat shock protein Hsp90; Molecular chaperone. Has ATPase activity.
  
 0.788
dnaK
Chaperone protein DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.771
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.768
DvMF_1108
Endo-1,4-beta-xylanase-like protein; KEGG: lip:LI0197 similar to endo-1,4-beta-xylanase.
  
 0.767
DvMF_2557
KEGG: dde:Dde_3707 hypothetical protein.
   
 0.716
DvMF_0796
PFAM: Calcium-binding EF-hand-containing protein; KEGG: abu:Abu_1162 hypothetical protein.
    
 0.708
DvMF_1626
PFAM: Calcium-binding EF-hand-containing protein; KEGG: gbe:GbCGDNIH1_1190 hypothetical secreted protein.
    
 0.708
DvMF_2987
KEGG: dde:Dde_1362 EF hand domain-containing protein.
    
 0.708
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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