STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1084PFAM: OmpA/MotB domain protein; KEGG: lip:LI0483 flagellar motor protein. (241 aa)    
Predicted Functional Partners:
DvMF_1085
KEGG: lip:LI0482 flagellar motor protein MotA.
 
 0.984
DvMF_2209
PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_3589 chemotaxis protein MotA.
 
 0.981
DvMF_0820
PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_1538 chemotaxis protein MotA.
 
 0.979
DvMF_2871
PFAM: MotA/TolQ/ExbB proton channel; KEGG: dde:Dde_1538 chemotaxis protein MotA.
 
 0.979
DvMF_2285
TIGRFAM: flagellar basal-body rod protein FlgC; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_0355 flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
 
  
 0.859
DvMF_2911
PFAM: flagellar protein FliS; KEGG: dde:Dde_1119 flagellar protein FliS.
 
  
 0.806
DvMF_2288
PFAM: flagellar motor switch protein FliG; KEGG: dde:Dde_0352 flagellar motor switch protein FliG.
 
  
 0.801
DvMF_2517
PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_3159 flagellar basal-body rod protein, putative; Belongs to the flagella basal body rod proteins family.
 
 
 0.767
DvMF_2524
TIGRFAM: flagellar hook-associated protein FlgK; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_3152 flagellar hook-associated protein; Belongs to the flagella basal body rod proteins family.
 
  
 0.744
DvMF_2912
Flagellar hook-associated 2 domain protein; Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end.
 
  
 0.731
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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