Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_1085KEGG: lip:LI0482 flagellar motor protein MotA. (281 aa)    
Predicted Functional Partners:
DvMF_1084
PFAM: OmpA/MotB domain protein; KEGG: lip:LI0483 flagellar motor protein.
 
 0.991
DvMF_0819
PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_1539 MotB protein, putative.
  
 0.978
DvMF_2210
PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_3588 OmpA family protein.
  
 0.978
DvMF_2211
PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_3587 chemotaxis protein MotB.
  
 0.978
DvMF_2870
PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_1539 MotB protein, putative.
  
 0.978
flgH
Flagellar L-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
  
 0.921
DvMF_2287
Flagellar M-ring protein FliF; The M ring may be actively involved in energy transduction. Belongs to the FliF family.
 
  
 0.912
DvMF_2518
TIGRFAM: flagellar basal-body rod protein FlgG; PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_3158 flagellar basal body rod protein FlgG; Belongs to the flagella basal body rod proteins family.
 
  
 0.895
flgI
Flagellar P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
  
 0.885
DvMF_1617
Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.
 
  
 0.868
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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