STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1098PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0592 glycosyltransferase-like protein. (408 aa)    
Predicted Functional Partners:
DvMF_3035
PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1433 heptosyltransferase family protein.
 
 
 0.929
DvMF_1574
PFAM: glycosyl transferase family 9; KEGG: bxe:Bxe_A3715 hypothetical protein.
 
 
 0.923
DvMF_2274
Three-deoxy-D-manno-octulosonic-acid transferase domain protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family.
    
 0.911
DvMF_3136
TIGRFAM: lipopolysaccharide heptosyltransferase II; PFAM: glycosyl transferase family 9; KEGG: dde:Dde_1482 heptosyltransferase family protein.
  
 
 0.910
DvMF_3016
PFAM: glycosyl transferase group 1; KEGG: dde:Dde_1402 glycosyl transferase, group 1 family protein.
  
     0.703
DvMF_2384
PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0256 glycosyl transferase, group 1 family protein.
  
     0.697
DvMF_3019
PFAM: glycosyl transferase group 1; KEGG: dde:Dde_0593 glycosyl transferase, group 1 family protein.
 
     0.653
DvMF_0282
Nucleotide sugar dehydrogenase; KEGG: dde:Dde_2042 UDP-glucose 6-dehydrogenase; TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; UDP-glucose/GDP-mannose dehydrogenase dimerisation; UDP-glucose/GDP-mannose dehydrogenase.
 
  
 0.610
DvMF_2946
KEGG: ade:Adeh_3213 hypothetical protein.
   
 
 0.559
DvMF_0141
TIGRFAM: dTDP-glucose 4,6-dehydratase; PFAM: NAD-dependent epimerase/dehydratase; short-chain dehydrogenase/reductase SDR; 3-beta hydroxysteroid dehydrogenase/isomerase; polysaccharide biosynthesis protein CapD; dTDP-4-dehydrorhamnose reductase; Male sterility domain; KEGG: dde:Dde_2182 dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
 
  
 0.537
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.