STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1101PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_0241 extracellular solute-binding protein. (295 aa)    
Predicted Functional Partners:
DvMF_1185
PFAM: extracellular solute-binding protein family 3; KEGG: cvi:CV_0248 hypothetical protein.
  
     0.766
DvMF_1176
PFAM: extracellular solute-binding protein family 3; KEGG: hch:HCH_04060 amino acid ABC transporter periplasmic protein.
  
     0.750
DvMF_1179
PFAM: extracellular solute-binding protein family 3; KEGG: cvi:CV_0248 hypothetical protein.
  
     0.702
DvMF_0301
PFAM: extracellular solute-binding protein family 3; KEGG: dde:Dde_1194 amino acid ABC transporter periplasmic protein.
  
     0.689
DvMF_3196
Hypothetical protein; KEGG: dde:Dde_3620 amino acid ABC transporter periplasmic protein.
  
     0.673
DvMF_0388
KEGG: gsu:GSU1295 hypothetical protein.
  
     0.560
DvMF_2123
TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR; KEGG: dde:Dde_3474 chromosome replication initiation inhibitor protein.
  
   
 0.502
DvMF_1102
Putative PAS/PAC sensor protein; KEGG: gme:Gmet_0701 cache sensor signal transduction histidine kinase; TIGRFAM: PAS sensor protein; PFAM: histidine kinase HAMP region domain protein; Cache type 2 domain protein; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein; PAC repeat-containing protein.
 
     0.493
DvMF_0838
KEGG: shm:Shewmr7_0582 hypothetical protein.
  
     0.438
DvMF_0180
KEGG: ppw:PputW619_4145 hypothetical protein.
  
     0.433
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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