STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1111KEGG: ote:Oter_4455 DsrE family protein. (69 aa)    
Predicted Functional Partners:
DvMF_0368
KEGG: dde:Dde_1959 hypothetical protein; Belongs to the sulfur carrier protein TusA family.
  
 
 0.882
DvMF_2659
Cysteine desulfurase NifS; Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine.
    
 0.831
DvMF_0238
KEGG: dol:Dole_0216 hypothetical protein.
  
 
 0.781
DvMF_1196
TIGRFAM: sulfur relay protein, TusE/DsrC/DsvC family; PFAM: DsrC family protein; KEGG: dde:Dde_0762 dissimilatory sulfite reductase, gamma subunit.
  
 
 0.781
DvMF_0875
PFAM: thiamine biosynthesis protein; KEGG: dde:Dde_2372 hypothetical protein.
    
 0.704
mnmA
tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase; Catalyzes the 2-thiolation of uridine at the wobble position (U34) of tRNA, leading to the formation of s(2)U34.
    
 0.704
DvMF_0145
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; SMART: Rhodanese domain protein; KEGG: dde:Dde_2176 rhodanese-like protein.
  
 
 0.703
DvMF_1948
PFAM: FAD-dependent pyridine nucleotide-disulphide oxidoreductase; pyridine nucleotide-disulphide oxidoreductase dimerisation region; FAD dependent oxidoreductase; KEGG: dde:Dde_0374 rhodanese-like protein.
  
 
 0.658
DvMF_0176
PFAM: protein of unknown function DUF395 YeeE/YedE; KEGG: glo:Glov_2970 protein of unknown function DUF395 YeeE/YedE.
  
 
 0.652
DvMF_1047
SMART: Rhodanese domain protein; KEGG: sfu:Sfum_0093 rhodanese domain protein.
  
 
 0.652
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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