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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1128PFAM: YbaK/prolyl-tRNA synthetase associated region; KEGG: gbm:Gbem_1948 YbaK/prolyl-tRNA synthetase associated region. (171 aa)    
Predicted Functional Partners:
DvMF_1127
TIGRFAM: succinate dehydrogenase and fumarate reductase iron-sulfur protein; PFAM: ferredoxin; 4Fe-4S ferredoxin iron-sulfur binding domain protein; KEGG: tpe:Tpen_1126 succinate dehydrogenase and fumarate reductase iron-sulfur protein; Belongs to the succinate dehydrogenase/fumarate reductase iron-sulfur protein family.
 
     0.533
fliE
TIGRFAM: flagellar hook-basal body complex subunit FliE; PFAM: flagellar hook-basal body complex protein FliE; KEGG: lip:LI0858 flagellar hook-basal body protein.
    
   0.522
DvMF_1126
PFAM: FAD dependent oxidoreductase; KEGG: tpe:Tpen_1127 FAD dependent oxidoreductase.
  
  
 0.485
DvMF_0247
Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.
    
   0.478
DvMF_0466
MCP methyltransferase, CheR-type; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.
    
   0.478
DvMF_0778
MCP methyltransferase, CheR-type; Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP.
    
   0.478
DvMF_1617
Flagellar hook capping protein; Required for flagellar hook formation. May act as a scaffolding protein.
    
   0.478
DvMF_2213
TIGRFAM: flagellar motor switch protein FliN; PFAM: surface presentation of antigens (SPOA) protein; KEGG: dde:Dde_3585 surface presentation of antigens (SpoA) protein.
    
   0.478
DvMF_2438
TIGRFAM: type III secretion system apparatus protein YscQ/HrcQ; PFAM: surface presentation of antigens (SPOA) protein; KEGG: lip:LI1166 putative translocation protein in type III secretion.
    
   0.478
DvMF_2517
PFAM: flagellar basal body rod protein; protein of unknown function DUF1078 domain protein; KEGG: dde:Dde_3159 flagellar basal-body rod protein, putative; Belongs to the flagella basal body rod proteins family.
    
   0.424
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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