STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1136SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_2717 TPR repeat-containing protein. (302 aa)    
Predicted Functional Partners:
DvMF_1135
PFAM: metal-dependent phosphohydrolase HD sub domain; Metal-dependent hydrolase HDOD; KEGG: dde:Dde_2716 putative signal transduction protein.
       0.788
DvMF_2009
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
 
     0.775
DvMF_1325
PFAM: TPR repeat-containing protein; SMART: Tetratricopeptide domain protein; KEGG: dde:Dde_2960 TPR repeat-containing protein.
  
     0.774
DvMF_1546
KEGG: dde:Dde_0564 hypothetical protein.
  
     0.774
DvMF_2586
KEGG: dde:Dde_0639 hypothetical protein.
  
     0.774
DvMF_0250
KEGG: dde:Dde_1715 CgeB family protein.
  
     0.772
DvMF_0248
PFAM: flagellar hook-length control protein; KEGG: dde:Dde_1713 hypothetical protein.
 
     0.771
DvMF_1393
TIGRFAM: flagellar export protein FliJ; KEGG: dde:Dde_2705 putative flagellar FliJ protein.
  
     0.771
DvMF_3199
KEGG: dde:Dde_2327 hypothetical protein.
  
     0.771
DvMF_0299
PFAM: glycosyl transferase family 9; KEGG: dde:Dde_2022 heptosyltransferase family protein.
  
     0.770
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.