STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1153Phenylacetate--CoA ligase; Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA). (434 aa)    
Predicted Functional Partners:
DvMF_0447
PFAM: amino acid-binding ACT domain protein; KEGG: dde:Dde_2088 ACT domain-containing protein.
 
   0.753
DvMF_2152
PFAM: thioesterase superfamily protein; KEGG: rci:LRC474 putative phenylacetic acid degradation protein.
 
  
 0.672
DvMF_2322
PFAM: iron-containing alcohol dehydrogenase; Aldehyde Dehydrogenase_; KEGG: emi:Emin_0772 iron-containing alcohol dehydrogenase; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
   
 
 0.549
DvMF_1154
PFAM: protein of unknown function DUF456; KEGG: dde:Dde_0973 hypothetical protein.
       0.534
DvMF_2146
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; Belongs to the aldehyde dehydrogenase family. In the N-terminal section; belongs to the proline dehydrogenase family.
   
 
 0.514
DvMF_1780
PFAM: Aldehyde Dehydrogenase_; KEGG: sfu:Sfum_1087 aldehyde dehydrogenase.
   
 
 0.497
DvMF_2633
PFAM: Aldehyde Dehydrogenase_; KEGG: dsy:DSY1102 hypothetical protein.
   
 
 0.497
DvMF_0639
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: gur:Gura_1001 methyltransferase type 11.
  
  
 0.462
DvMF_0610
Indolepyruvate ferredoxin oxidoreductase, alpha subunit; Catalyzes the ferredoxin-dependent oxidative decarboxylation of arylpyruvates.
 
    0.460
DvMF_1152
PFAM: Domain of unkown function DUF1786 putative pyruvate format-lyase activating enzyme; KEGG: dde:Dde_0971 hypothetical protein.
       0.446
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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