STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1159TIGRFAM: type I secretion membrane fusion protein, HlyD family; PFAM: secretion protein HlyD family protein; KEGG: dde:Dde_1419 type I secretion membrane fusion protein, HlyD. (466 aa)    
Predicted Functional Partners:
DvMF_1160
Cyclic nucleotide-binding protein; KEGG: dde:Dde_1418 ATPase; TIGRFAM: type I secretion system ATPase; PFAM: ABC transporter related; SMART: AAA ATPase.
 
 0.988
DvMF_1158
PFAM: transglutaminase family protein cysteine peptidase BTLCP; KEGG: dde:Dde_1420 hypothetical protein.
 
  
 0.960
DvMF_1494
TIGRFAM: type I secretion outer membrane protein, TolC family; PFAM: outer membrane efflux protein; KEGG: dde:Dde_1415 type I secretion outer membrane protein, TolC.
 
 
 0.924
DvMF_1495
PFAM: Hemolysin-type calcium-binding region; von Willebrand factor type A; KEGG: asa:ASA_1675 hemolysin-type calcium-binding repeat-containing protein.
 
  
 0.810
DvMF_2298
PFAM: outer membrane efflux protein; KEGG: ppd:Ppro_1440 outer membrane efflux protein.
  
 
 0.682
DvMF_2365
PFAM: outer membrane efflux protein; KEGG: dde:Dde_3627 outer membrane efflux protein.
  
 
 0.682
DvMF_1157
KEGG: dde:Dde_1421 putative PAS/PAC sensor protein; TIGRFAM: PAS sensor protein; PFAM: metal-dependent phosphohydrolase HD sub domain; PAS fold-4 domain protein; PAS fold domain protein; SMART: PAS domain containing protein.
 
     0.675
DvMF_1355
Hypothetical protein; KEGG: ter:Tery_2034 RTX toxins and related Ca2+-binding protein.
 
  
 0.668
DvMF_0034
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: sfu:Sfum_3923 outer membrane efflux protein.
  
 
 0.653
DvMF_1627
TIGRFAM: RND efflux system, outer membrane lipoprotein, NodT family; PFAM: outer membrane efflux protein; KEGG: pca:Pcar_0814 outer membrane protein.
  
 
 0.653
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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