Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1183KEGG: dde:Dde_0979 hypothetical protein. (87 aa)    
Predicted Functional Partners:
DvMF_1182
KEGG: dde:Dde_0980 hypothetical protein.
  
    0.918
DvMF_2891
KEGG: dde:Dde_1106 5-enolpyruvylshikimate-3-phosphate synthase-like.
 
    0.781
DvMF_1387
PFAM: ATP synthase I; KEGG: dde:Dde_2699 hypothetical protein.
  
     0.773
DvMF_2497
KEGG: dde:Dde_3184 hypothetical protein.
  
     0.773
DvMF_0962
KEGG: dde:Dde_1035 hypothetical protein.
  
     0.771
DvMF_0240
KEGG: dde:Dde_1702 hypothetical protein.
  
     0.770
DvMF_0343
PFAM: GAF domain protein; KEGG: dde:Dde_1994 hypothetical protein.
  
     0.769
DvMF_0342
KEGG: dde:Dde_1995 hypothetical protein.
  
     0.765
DvMF_2764
KEGG: dde:Dde_2840 hypothetical protein.
  
     0.764
DvMF_0363
SMART: TRASH domain protein; KEGG: dde:Dde_1968 TRASH.
  
     0.763
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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