Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rnyRNA binding metal dependent phosphohydrolase; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. (519 aa)    
Predicted Functional Partners:
DvMF_0760
PFAM: PSP1 domain protein; KEGG: dde:Dde_1593 hypothetical protein.
 
  
 0.754
DvMF_0679
PFAM: O-antigen polymerase; KEGG: gbm:Gbem_1788 O-antigen polymerase.
  
  
 0.686
DvMF_3018
PFAM: O-antigen polymerase; KEGG: lip:LI0825 lipid A core-O-antigen ligase and related enzymes.
  
  
 0.686
DvMF_2212
Flagellar basal body-associated protein FliL; Controls the rotational direction of flagella during chemotaxis; Belongs to the FliL family.
    
   0.529
trmD
tRNA (guanine-N1)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
      
 0.498
DvMF_1134
TIGRFAM: single-stranded-DNA-specific exonuclease RecJ; PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: dde:Dde_2715 single-stranded-DNA-specific exonuclease RecJ.
  
    0.474
DvMF_2511
PFAM: phosphoesterase RecJ domain protein; phosphoesterase DHHA1; KEGG: dde:Dde_3164 DHH family protein.
 
   
 0.462
rpsO
Ribosomal protein S15; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it helps nucleate assembly of the platform of the 30S subunit by binding and bridging several RNA helices of the 16S rRNA.
  
  
 0.450
DvMF_0819
PFAM: OmpA/MotB domain protein; KEGG: dde:Dde_1539 MotB protein, putative.
   
   0.436
DvMF_1084
PFAM: OmpA/MotB domain protein; KEGG: lip:LI0483 flagellar motor protein.
   
   0.436
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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