Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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[Homology]
Score
DvMF_1206KEGG: ana:alr2112 unknown protein. (198 aa)    
Predicted Functional Partners:
DvMF_1207
PFAM: regulatory protein ArsR; KEGG: dde:Dde_0747 ArsR family transcriptional regulator.
       0.718
DvMF_0453
PFAM: TrkA-N domain protein; TrkA-C domain protein; Ion transport 2 domain protein; KEGG: dde:Dde_2095 TrkA family potassium uptake protein.
 
     0.630
DvMF_0588
KEGG: dde:Dde_2624 hypothetical protein.
  
     0.478
DvMF_1208
PFAM: CheW domain protein; KEGG: glo:Glov_1734 CheW protein.
       0.413
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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