STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1261Putative phage repressor; PFAM: CI repressor; peptidase S24 and S26 domain protein; KEGG: lip:LI0836 predicted transcriptional regulator. (236 aa)    
Predicted Functional Partners:
DvMF_1265
KEGG: dde:Dde_3351 bacteriophage DNA transposition B protein, putative.
 
     0.626
DvMF_1264
PFAM: Transposase-like Mu; KEGG: dde:Dde_3350 bacteriophage transposase A protein, putative.
 
     0.601
DvMF_2558
KEGG: dde:Dde_1011 hypothetical protein.
  
     0.601
DvMF_2846
KEGG: dde:Dde_1010 hypothetical protein.
  
     0.576
DvMF_1282
KEGG: dde:Dde_3372 portal protein, putative.
 
     0.554
DvMF_1268
PFAM: Mu Gam family protein; KEGG: dde:Dde_3354 host-nuclease inhibitor protein Gam, putative.
 
     0.531
DvMF_0713
PFAM: Transposase-like Mu; KEGG: bvi:Bcep1808_1328 MuA-transposase/repressor protein CI, DNA-binding.
 
     0.495
DvMF_3088
KEGG: dde:Dde_2441 hypothetical protein.
  
     0.495
DvMF_2836
KEGG: dde:Dde_1022 hypothetical protein.
  
     0.483
DvMF_0472
KEGG: dde:Dde_2111 hypothetical protein.
  
     0.473
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.