Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
DvMF_1271KEGG: dde:Dde_3358 hypothetical protein. (167 aa)    
Predicted Functional Partners:
DvMF_1273
KEGG: dde:Dde_3360 DNA-binding protein.
  
    0.849
DvMF_1272
KEGG: dde:Dde_3359 hypothetical protein.
  
    0.839
DvMF_1270
KEGG: dde:Dde_3357 hypothetical protein.
       0.773
DvMF_1683
PFAM: protein of unknown function DUF1351; KEGG: cpy:Cphy_2989 hypothetical protein.
   
    0.635
DvMF_1299
KEGG: dde:Dde_3387 hypothetical protein.
   
    0.630
DvMF_1274
KEGG: glo:Glov_1411 hypothetical protein.
       0.592
DvMF_1265
KEGG: dde:Dde_3351 bacteriophage DNA transposition B protein, putative.
  
    0.582
DvMF_1264
PFAM: Transposase-like Mu; KEGG: dde:Dde_3350 bacteriophage transposase A protein, putative.
  
    0.579
DvMF_1268
PFAM: Mu Gam family protein; KEGG: dde:Dde_3354 host-nuclease inhibitor protein Gam, putative.
  
    0.577
DvMF_0653
TIGRFAM: N-carbamoylputrescine amidase; PFAM: Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase; KEGG: ypb:YPTS_3343 N-carbamoylputrescine amidase.
   
    0.543
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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