Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1273KEGG: dde:Dde_3360 DNA-binding protein. (155 aa)    
Predicted Functional Partners:
DvMF_1271
KEGG: dde:Dde_3358 hypothetical protein.
  
    0.849
DvMF_1272
KEGG: dde:Dde_3359 hypothetical protein.
  
    0.808
DvMF_1270
KEGG: dde:Dde_3357 hypothetical protein.
       0.773
DvMF_1299
KEGG: dde:Dde_3387 hypothetical protein.
   
    0.626
DvMF_1274
KEGG: glo:Glov_1411 hypothetical protein.
       0.592
DvMF_1269
Hypothetical protein.
       0.536
DvMF_1266
KEGG: dde:Dde_3352 hypothetical protein.
       0.512
DvMF_1268
PFAM: Mu Gam family protein; KEGG: dde:Dde_3354 host-nuclease inhibitor protein Gam, putative.
       0.510
DvMF_1265
KEGG: dde:Dde_3351 bacteriophage DNA transposition B protein, putative.
       0.508
DvMF_1264
PFAM: Transposase-like Mu; KEGG: dde:Dde_3350 bacteriophage transposase A protein, putative.
       0.507
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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