STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1275KEGG: sgl:SG0829 hypothetical protein. (133 aa)    
Predicted Functional Partners:
DvMF_1276
PFAM: Lytic transglycosylase catalytic; KEGG: bbr:BB3638 putative lytic murein transglycosylase precursor.
  
    0.800
DvMF_1279
KEGG: sfu:Sfum_1873 hypothetical protein.
  
    0.777
DvMF_1277
Hypothetical protein; KEGG: jan:Jann_1769 mucin-associated surface protein.
       0.773
DvMF_1278
KEGG: mpa:MAP4242 hypothetical protein.
       0.773
DvMF_1280
Hypothetical protein.
       0.773
DvMF_1281
KEGG: dde:Dde_3371 hypothetical protein.
       0.693
DvMF_1274
KEGG: glo:Glov_1411 hypothetical protein.
       0.572
DvMF_1282
KEGG: dde:Dde_3372 portal protein, putative.
       0.493
DvMF_1271
KEGG: dde:Dde_3358 hypothetical protein.
  
    0.465
DvMF_1272
KEGG: dde:Dde_3359 hypothetical protein.
  
    0.465
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.