Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1293KEGG: dde:Dde_3382 hypothetical protein. (561 aa)    
Predicted Functional Partners:
DvMF_1294
KEGG: dde:Dde_3383 hypothetical protein.
 
     0.954
DvMF_1290
TIGRFAM: phage virion morphogenesis protein; PFAM: virion morphogenesis (putative tail completion) protein; KEGG: dde:Dde_3379 phage virion morphogenesis (putative tail completion) protein.
 
     0.894
DvMF_1286
KEGG: dde:Dde_3375 hypothetical protein.
 
     0.824
DvMF_1303
KEGG: dde:Dde_3391 baseplate assembly protein, putative.
 
     0.789
DvMF_1284
PFAM: protein of unknown function DUF935; KEGG: dde:Dde_3373 hypothetical protein.
 
     0.788
DvMF_1291
KEGG: dde:Dde_3380 hypothetical protein.
       0.779
DvMF_1292
KEGG: eci:UTI89_C5135 hypothetical protein.
       0.751
DvMF_1298
TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region; KEGG: sew:SeSA_A4475 tail protein.
 
     0.748
DvMF_1285
TIGRFAM: phage head morphogenesis protein, SPP1 gp7 family; PFAM: putative head morphogenesis protein SPP1 gp7; KEGG: dde:Dde_3374 phage putative head morphogenesis protein, SPP1 gp7.
 
     0.685
DvMF_1264
PFAM: Transposase-like Mu; KEGG: dde:Dde_3350 bacteriophage transposase A protein, putative.
  
     0.675
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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