Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_1298TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region; KEGG: sew:SeSA_A4475 tail protein. (781 aa)    
Predicted Functional Partners:
DvMF_1300
KEGG: dde:Dde_3388 hypothetical protein.
  
    0.891
DvMF_0731
TIGRFAM: phage virion morphogenesis protein; PFAM: virion morphogenesis (putative tail completion) protein; KEGG: rsq:Rsph17025_2099 phage virion morphogenesis protein.
 
    0.847
DvMF_1290
TIGRFAM: phage virion morphogenesis protein; PFAM: virion morphogenesis (putative tail completion) protein; KEGG: dde:Dde_3379 phage virion morphogenesis (putative tail completion) protein.
 
    0.835
DvMF_1299
KEGG: dde:Dde_3387 hypothetical protein.
       0.799
DvMF_1301
KEGG: dde:Dde_3389 baseplate assembly protein, putative.
       0.791
DvMF_1284
PFAM: protein of unknown function DUF935; KEGG: dde:Dde_3373 hypothetical protein.
 
    0.776
DvMF_1264
PFAM: Transposase-like Mu; KEGG: dde:Dde_3350 bacteriophage transposase A protein, putative.
  
     0.764
DvMF_1286
KEGG: dde:Dde_3375 hypothetical protein.
 
     0.764
DvMF_1161
PFAM: Hemolysin-type calcium-binding region; KEGG: rso:RS05070 putative hemagglutinin/hemolysin-related protein.
 
    0.759
DvMF_0734
KEGG: bvi:Bcep1808_1303 hypothetical protein.
 
     0.755
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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