STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1303KEGG: dde:Dde_3391 baseplate assembly protein, putative. (390 aa)    
Predicted Functional Partners:
DvMF_1305
KEGG: dde:Dde_3393 tail fiber protein, putative.
 
    0.912
DvMF_1306
KEGG: dde:Dde_3394 hypothetical protein.
  
    0.823
DvMF_1302
KEGG: dde:Dde_3390 baseplate assembly protein, putative.
       0.795
DvMF_1304
KEGG: dde:Dde_3392 hypothetical protein.
       0.794
DvMF_1293
KEGG: dde:Dde_3382 hypothetical protein.
 
     0.789
DvMF_1294
KEGG: dde:Dde_3383 hypothetical protein.
 
     0.775
DvMF_1284
PFAM: protein of unknown function DUF935; KEGG: dde:Dde_3373 hypothetical protein.
 
     0.758
DvMF_1286
KEGG: dde:Dde_3375 hypothetical protein.
 
   
 0.752
DvMF_0728
TIGRFAM: phage uncharacterized protein; KEGG: nma:NMA1852 hypothetical protein.
 
    0.748
DvMF_1298
TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region; KEGG: sew:SeSA_A4475 tail protein.
 
     0.745
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.