STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1305KEGG: dde:Dde_3393 tail fiber protein, putative. (505 aa)    
Predicted Functional Partners:
DvMF_1643
TIGRFAM: phage tape measure protein; KEGG: mfa:Mfla_2689 hypothetical protein.
 
  
 0.944
DvMF_1306
KEGG: dde:Dde_3394 hypothetical protein.
  
  
 0.915
DvMF_1303
KEGG: dde:Dde_3391 baseplate assembly protein, putative.
 
    0.912
DvMF_1304
KEGG: dde:Dde_3392 hypothetical protein.
       0.786
DvMF_1302
KEGG: dde:Dde_3390 baseplate assembly protein, putative.
       0.775
DvMF_1639
Phage-related protein tail component-like protein; KEGG: mag:amb0395 hypothetical protein.
 
    0.741
DvMF_0743
KEGG: bbr:BB3617 hypothetical protein.
 
     0.715
DvMF_1161
PFAM: Hemolysin-type calcium-binding region; KEGG: rso:RS05070 putative hemagglutinin/hemolysin-related protein.
 
     0.712
DvMF_0659
Hypothetical protein; KEGG: mka:MK0390 HD-superfamily hydrolase.
  
     0.691
DvMF_1781
PFAM: glycosyl transferase family 8; KEGG: cre:CHLREDRAFT_186791 hypothetical protein Pfam: Cu-oxidase_3 DUF246 Glyco_transf_8.
  
     0.688
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.