Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
DvMF_1306KEGG: dde:Dde_3394 hypothetical protein. (152 aa)    
Predicted Functional Partners:
DvMF_1305
KEGG: dde:Dde_3393 tail fiber protein, putative.
  
  
 0.919
DvMF_1643
TIGRFAM: phage tape measure protein; KEGG: mfa:Mfla_2689 hypothetical protein.
  
    0.852
DvMF_1303
KEGG: dde:Dde_3391 baseplate assembly protein, putative.
  
  
 0.826
DvMF_1302
KEGG: dde:Dde_3390 baseplate assembly protein, putative.
       0.757
DvMF_1304
KEGG: dde:Dde_3392 hypothetical protein.
       0.757
DvMF_1039
KEGG: dol:Dole_1407 type II secretory pathway ATPase ExeA.
  
    0.725
DvMF_0751
KEGG: lip:LIC026 hypothetical protein.
  
  
 0.683
DvMF_1636
KEGG: nmu:Nmul_A1447 hypothetical protein.
  
  
 0.683
DvMF_0745
KEGG: bbr:BB3615 putative phage tail protein.
  
    0.532
DvMF_1308
PFAM: DNA methylase N-4/N-6 domain protein; KEGG: dde:Dde_1300 adenine specific DNA methyltransferase, putative; Belongs to the N(4)/N(6)-methyltransferase family.
  
  
 0.512
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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