Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
DvMF_1308PFAM: DNA methylase N-4/N-6 domain protein; KEGG: dde:Dde_1300 adenine specific DNA methyltransferase, putative; Belongs to the N(4)/N(6)-methyltransferase family. (253 aa)    
Predicted Functional Partners:
sucD
succinyl-CoA synthetase, alpha subunit; Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit.
  
    0.837
DvMF_1307
KEGG: dde:Dde_3395 hypothetical protein.
  
    0.777
DvMF_1303
KEGG: dde:Dde_3391 baseplate assembly protein, putative.
 
    0.631
DvMF_1305
KEGG: dde:Dde_3393 tail fiber protein, putative.
 
    0.563
DvMF_1306
KEGG: dde:Dde_3394 hypothetical protein.
  
  
 0.512
DvMF_1660
PFAM: HNH endonuclease; SMART: HNH nuclease; KEGG: bpm:BURPS1710b_1677 GP70.
 
  
 0.499
DvMF_1657
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: smd:Smed_1336 phage portal protein, HK97 family.
 
  
 0.475
DvMF_1302
KEGG: dde:Dde_3390 baseplate assembly protein, putative.
  
    0.415
DvMF_0476
PFAM: dihydropteroate synthase DHPS; homocysteine S-methyltransferase; Methionine synthase B12-binding module cap domain protein; cobalamin B12-binding domain protein; KEGG: dde:Dde_2115 methionine synthase (B12-dependent).
      
 0.407
DvMF_1304
KEGG: dde:Dde_3392 hypothetical protein.
       0.404
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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