STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1313KEGG: dde:Dde_3758 hypothetical protein. (289 aa)    
Predicted Functional Partners:
DvMF_3144
PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1487 glycosyl transferase, group 2 family protein.
 
     0.705
DvMF_1855
KEGG: dde:Dde_0428 glycosyltransferase-like protein.
  
     0.662
DvMF_2395
KEGG: dde:Dde_0337 glycosyl transferase, group 2 family protein.
 
     0.660
DvMF_1927
PFAM: glycosyl transferase family 2; KEGG: dde:Dde_0215 glycosyl transferase, group 2 family protein.
 
     0.650
DvMF_2141
PFAM: peptidase U32; KEGG: dde:Dde_0058 U32 family peptidase.
  
  
 0.617
DvMF_2645
PFAM: peptidase U32; KEGG: dde:Dde_3095 U32 family peptidase.
  
  
 0.617
DvMF_3143
PFAM: glycosyl transferase family 2; KEGG: dde:Dde_1486 glycosyl transferase, group 2 family protein.
 
     0.611
DvMF_1682
KEGG: gsu:GSU2152 hypothetical protein.
  
     0.605
DvMF_0743
KEGG: bbr:BB3617 hypothetical protein.
  
     0.603
DvMF_1639
Phage-related protein tail component-like protein; KEGG: mag:amb0395 hypothetical protein.
  
     0.571
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.