Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
DvMF_1317PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_2953 ATPase. (251 aa)    
Predicted Functional Partners:
DvMF_1318
PFAM: BioY protein; KEGG: dde:Dde_2954 BioY family protein.
 
 
 0.995
DvMF_3138
TIGRFAM: cobalt ABC transporter, inner membrane subunit CbiQ; PFAM: cobalt transport protein; KEGG: dde:Dde_1192 cobalt ABC transporter, permease protein, putative.
  
 0.985
DvMF_2782
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_0232 ATPase.
  
  
  0.896
DvMF_3137
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dps:DP0756 ABC transporter, ATP-binding protein.
  
  
 
0.866
DvMF_2477
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sfu:Sfum_3696 ABC transporter related.
 
  
  0.850
DvMF_2110
KEGG: dde:Dde_3778 oligopeptide/dipeptide ABC transporter, ATP-binding protein-like; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
  
 0.848
DvMF_1436
KEGG: dde:Dde_2975 hypothetical protein.
    
  0.845
DvMF_2156
PFAM: ABC transporter related; ABC-2 type transporter; SMART: AAA ATPase; KEGG: sfu:Sfum_2391 ABC transporter related.
  
 
 0.841
DvMF_0941
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: dde:Dde_1055 ATPase.
     
 0.837
DvMF_0375
PFAM: permease YjgP/YjgQ family protein; KEGG: dde:Dde_1949 permease, putative.
     
  0.835
Your Current Organism:
Desulfovibrio vulgaris Miyazaki
NCBI taxonomy Id: 883
Other names: D. vulgaris str. 'Miyazaki F', Desulfovibrio vulgaris (strain Miyazaki), Desulfovibrio vulgaris str. 'Miyazaki F'
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